Nanoanatomy Museum: Creating a Protein Family ProfileGrid Database
نویسندگان
چکیده
منابع مشابه
ProClass protein family database
ProClass is a protein family database that organizes non-redundant sequence entries into families defined collectively by PROSITE patterns and PIR superfamilies. By combining global similarities and functional motifs into a single classification scheme, ProClass helps to reveal domain and family relationships and classify multi-domain proteins. The database currently consists of more than 120 0...
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The PFDB (Protein Family Database) is a new database designed to integrate protein family-related data with relevant functional and genomic data. It currently manages biological data for three projects – the CATH protein domain database (Orengo et al., 1997; Pearl et al., 2001), the VIDA virus domains database (Albà et al., 2001) and the Gene3D database (Buchan et al. 2001). The PFDB has been d...
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We propose a novel method for crowdsourcing a protein family database. We discuss how we intend to identify novel groupings of proteins from user sequence similarity search, and how text mining will be applied to assist in annotation of these novel groupings, and more broadly as an enrichment of protein sequence similarity search results. We intend to use entity linking to identify literature w...
متن کاملPFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources
MOTIVATION The PFDB (Protein Family Database) is a new database designed to integrate protein family-related data with relevant functional and genomic data. It currently manages biological data for three projects-the CATH protein domain database (Orengo et al., 1997; Pearl et al., 2001), the VIDA virus domains database (Albà et al., 2001) and the Gene3D database (Buchan et al., 2001). The PFDB ...
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ژورنال
عنوان ژورنال: The FASEB Journal
سال: 2012
ISSN: 0892-6638,1530-6860
DOI: 10.1096/fasebj.26.1_supplement.774.5